Intro to Biologial Research Course Schedule

revised 12 Sep 2008, PKS - please check for errors.

Some reading links are below. Click here for book list.

Date Class Topic Class Activity Read for Today Assignments Due Today
27 Aug

Course intro including
Syllabus, assignments, grades.
Critiquing a presentation
How to give a presentation.
Powerpoint fundamentals.
Mechanics of a literature search (online demo - bring laptops)

Name that colleague    
3 Sep

Review papers
Purposes, audiences.
How to write YOUR review paper for this course.

Review dept seminar, Discuss readings. Childers 2004
Kuyper 1991
Sand-Jensen 2007

List of 10 best journals with URLs & URLs for e-mail TOCs (electronic only Phil & Lidia)

10 Sep

Scientific advance
Big & small questions
Narrowing to the tractable

Scientific Advances Russell & Morrison ch 1,2

Scientific Advances assignment

Topic for your review (electronic only Phil & Lidia)

17 Sep

Proposals
Types, RFPs, selling an idea & structure of a pitch.
Writing the proposal for this course.

Big Questions Gordon ch 3,8
Platt 1964
Quinn & Dunham 1983

Nester 1996

Big Questions assignment

Grant Questions assignment (from last week)

Formatted bibliography with 50+ refs on your topic
(electronic only Phil & Lidia)

24 Sep

Logic of statistical inference
Proof, support, & refutation.
Hypothesis vs. theory.
What statistics mean.
Value of hypothesis testing.

Present big Q and proposal ideas in groups. Work to improve articulation & approaches.

Review paper formatting instructions.
Uniform requirements for manuscripts submitted to biomedical journals: writing and editing for biomedical publication

Topic for research proposal
(bring 6 paper copies for group, plus 6 of your big Q from last week)

1 Oct

Experimental design, controls, intrusion

 

Pseudoreplication Challenge

Gordon ch 5,6
Hurlbert 1984

 

8 Oct

How to succeed in grad school.
Mo Donnelly, Assoc. Dean.

Mo's PPT.file (2.8MB)

Thompson 2002
Stearns 1987
Huey 1987

 
15 Oct Grant proposals
organization & formats, budgets, red tape (IACUC, IRB, clearance)

Design "Evalutation of learning event"


Literature review
(3 paper copies
Lidia, Phil, your advisor)

22 Oct

Graphics in science
Drawing, graphing data, design of figures, concept maps

Discuss & improve proposal pitches.

Russell & Morrison ch 3-6
Sample NSF Doctoral Dissertation Improvement Grant (1.5MB PDF)

NSF evaluation criteria

Two-page double-spaced proposal "pitch", includes big & narrow questions and specific aims.

Download and start using these:
proposal instructions
proposal template
budget form

29 Oct

Scientific Presentations
Graphing different kinds of data
Graphics & Powerpoint
Improving graphics.

Selecting & improving graphics
(bring white paper, colored pens or pencils, and laptop computer if you have one)

Kroodsma & Byers 2000
Pechenik ch 12
review Pechenik ch 14, 15

 

Preparing a CV
5 Nov Evalutation of learning event.  

 

 
12 Nov

Ethical issues for grad students: IACUC, IBR, honesty, authorship, fraud, romance, etc.

 

Kevles DJ, "The assault on David Baltimore," The New Yorker, May 27, 1996, p. 94

Gunsalus CK 1998. How to blow the whistle and still have a career afterwards. Science and Engineering Ethics 4:51-64

 
19 Nov How grant review panels work
Panel instructions
Panel summary form
 
26 Nov Hand in grant proposals &
get proposals to review
    Grant proposal
(5 paper copies)
3 Dec

Review Panels

 

 

Proposal reviews